J3_4UY8_016
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4UY8|1|A|U|34, 4UY8|1|A|U|448, 4UY8|1|A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UY8_016 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0617
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4UY8|1|A|C|32
4UY8|1|A|C|33
4UY8|1|A|U|34
4UY8|1|A|G|35
*
4UY8|1|A|C|445
4UY8|1|A|G|446
4UY8|1|A|A|447
4UY8|1|A|U|448
4UY8|1|A|A|449
4UY8|1|A|G|450
4UY8|1|A|U|451
4UY8|1|A|G|452
4UY8|1|A|A|453
4UY8|1|A|A|454
4UY8|1|A|C|455
4UY8|1|A|C|456
4UY8|1|A|A|457
4UY8|1|A|G|458
4UY8|1|A|U|459
4UY8|1|A|A|460
4UY8|1|A|C|461
*
4UY8|1|A|G|468
4UY8|1|A|G|469
4UY8|1|A|A|470
4UY8|1|A|A|471
4UY8|1|A|A|472
4UY8|1|A|G|473
Current chains
- Chain A
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S RIBOSOMAL PROTEIN L34
- Chain 7
- TRYPTOPHANASE
- Chain E
- 50S RIBOSOMAL PROTEIN L4
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain T
- 50S RIBOSOMAL PROTEIN L23
Coloring options: