J3_4V19_001

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V19|1|A|G|253, 4V19|1|A|G|338, 4V19|1|A|A|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V19_001 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1233

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V19|1|A|C|250
4V19|1|A|G|251
4V19|1|A|A|252
4V19|1|A|G|253
4V19|1|A|C|254
4V19|1|A|U|255
4V19|1|A|A|256
*
4V19|1|A|U|319
4V19|1|A|A|320
4V19|1|A|G|321
*
4V19|1|A|C|337
4V19|1|A|G|338
4V19|1|A|A|339
4V19|1|A|G|340

Current chains

Chain A

MITORIBOSOMAL 16S RRNA

Nearby chains

Chain 7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain D

MITORIBOSOMAL PROTEIN UL2M, MRPL2