3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
CCAG*CGAAC*GAUGAG
Length
15 nucleotides
Bulged bases
4V49|1|B0|A|777
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V49_016 not in the Motif Atlas
Geometric match to J3_5TBW_005
Geometric discrepancy: 0.2986
The information below is about J3_5TBW_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_33851.1
Basepair signature
cWW-tSH-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

4V49|1|B0|C|710
4V49|1|B0|C|711
4V49|1|B0|A|712
4V49|1|B0|G|713
*
4V49|1|B0|C|745
4V49|1|B0|G|746
4V49|1|B0|A|747
4V49|1|B0|A|748
4V49|1|B0|C|749
*
4V49|1|B0|G|773
4V49|1|B0|A|774
4V49|1|B0|U|775
4V49|1|B0|G|776
4V49|1|B0|A|777
4V49|1|B0|G|778

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BA
50S ribosomal protein L2

Coloring options:


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