3D structure

PDB id
4V49 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
8.7 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
4V49|1|B0|A|2497, 4V49|1|B0|U|2498
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V49_022 not in the Motif Atlas
Homologous match to J3_7RQB_012
Geometric discrepancy: 0.2618
The information below is about J3_7RQB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.3
Basepair signature
cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
4

Unit IDs

4V49|1|B0|C|2496
4V49|1|B0|A|2497
4V49|1|B0|U|2498
4V49|1|B0|C|2499
*
4V49|1|B0|G|2524
4V49|1|B0|U|2525
4V49|1|B0|U|2526
*
4V49|1|B0|A|2540
4V49|1|B0|U|2541
4V49|1|B0|U|2542
4V49|1|B0|A|2543
4V49|1|B0|A|2544
4V49|1|B0|A|2545
4V49|1|B0|G|2546

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

Chain BI
50S ribosomal protein L14

Coloring options:


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