J3_4V4A_015

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

4V4A|1|B0|A|777

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4A_015 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2986

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V4A|1|B0|C|710
4V4A|1|B0|C|711
4V4A|1|B0|A|712
4V4A|1|B0|G|713
*
4V4A|1|B0|C|745
4V4A|1|B0|G|746
4V4A|1|B0|A|747
4V4A|1|B0|A|748
4V4A|1|B0|C|749
*
4V4A|1|B0|G|773
4V4A|1|B0|A|774
4V4A|1|B0|U|775
4V4A|1|B0|G|776
4V4A|1|B0|A|777
4V4A|1|B0|G|778

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BA

50S ribosomal protein L2