3D structure

PDB id
4V4A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
9.5 Å

Loop

Sequence
CGUAAG*CGA*UAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4A_017 not in the Motif Atlas
Homologous match to J3_7A0S_006
Geometric discrepancy: 0.2943
The information below is about J3_7A0S_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.7
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V4A|1|B0|C|1311
4V4A|1|B0|G|1312
4V4A|1|B0|U|1313
4V4A|1|B0|A|1314
4V4A|1|B0|A|1315
4V4A|1|B0|G|1316
*
4V4A|1|B0|C|1641
4V4A|1|B0|G|1642
4V4A|1|B0|A|1643
*
4V4A|1|B0|U|1656
4V4A|1|B0|A|1657
4V4A|1|B0|A|1658
4V4A|1|B0|G|1659

Current chains

Chain B0
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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