J3_4V4A_021

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V4A|1|B0|A|2497, 4V4A|1|B0|U|2498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4A_021 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.2618

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V4A|1|B0|C|2496
4V4A|1|B0|A|2497
4V4A|1|B0|U|2498
4V4A|1|B0|C|2499
*
4V4A|1|B0|G|2524
4V4A|1|B0|U|2525
4V4A|1|B0|U|2526
*
4V4A|1|B0|A|2540
4V4A|1|B0|U|2541
4V4A|1|B0|U|2542
4V4A|1|B0|A|2543
4V4A|1|B0|A|2544
4V4A|1|B0|A|2545
4V4A|1|B0|G|2546

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BI

50S ribosomal protein L14