3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4V4G|1|AA|U|870, 4V4G|1|AA|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4G_006 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.4109
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4V4G|1|AA|C|826
4V4G|1|AA|U|827
4V4G|1|AA|A|828
4V4G|1|AA|G|829
*
4V4G|1|AA|C|857
4V4G|1|AA|G|858
4V4G|1|AA|A|859
4V4G|1|AA|A|860
4V4G|1|AA|G|861
*
4V4G|1|AA|C|868
4V4G|1|AA|G|869
4V4G|1|AA|U|870
4V4G|1|AA|U|871
4V4G|1|AA|A|872
4V4G|1|AA|A|873
4V4G|1|AA|G|874

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AE
30S ribosomal protein S5
Chain AH
30S ribosomal protein S8

Coloring options:


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