J3_4V4G_047
3D structure
- PDB id
- 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 11.5 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCAG
- Length
- 15 nucleotides
- Bulged bases
- 4V4G|1|DA|A|15, 4V4G|1|DA|U|16, 4V4G|1|DA|U|110, 4V4G|1|DA|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4G_047 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.5679
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4G|1|DA|C|12
4V4G|1|DA|C|13
4V4G|1|DA|C|14
4V4G|1|DA|A|15
4V4G|1|DA|U|16
4V4G|1|DA|A|17
4V4G|1|DA|G|18
*
4V4G|1|DA|C|70
4V4G|1|DA|G|71
4V4G|1|DA|C|72
*
4V4G|1|DA|G|109
4V4G|1|DA|U|110
4V4G|1|DA|C|111
4V4G|1|DA|A|112
4V4G|1|DA|G|113
Current chains
- Chain DA
- 5S RIBOSOMAL RNA
Nearby chains
- Chain DB
- Large subunit ribosomal RNA; LSU rRNA
- Chain DP
- 50S ribosomal protein L18
- Chain DW
- general stress protein Ctc
- Chain DX
- 50S ribosomal protein L27
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