J3_4V4G_087

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V4G|1|FB|C|1623, 4V4G|1|FB|A|1625, 4V4G|1|FB|A|1626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4G_087 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.4396

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V4G|1|FB|C|1319
4V4G|1|FB|A|1320
4V4G|1|FB|A|1321
4V4G|1|FB|G|1322
*
4V4G|1|FB|C|1621
4V4G|1|FB|G|1622
4V4G|1|FB|C|1623
4V4G|1|FB|A|1624
4V4G|1|FB|A|1625
4V4G|1|FB|A|1626
4V4G|1|FB|C|1627
*
4V4G|1|FB|G|1636
4V4G|1|FB|U|1637
4V4G|1|FB|G|1638

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F4

50S ribosomal protein L34