J3_4V4G_148

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGUAAG*CGAG*CUAAG

Length

15 nucleotides

Bulged bases

4V4G|1|JB|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4G_148 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.5611

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4G|1|JB|C|1311
4V4G|1|JB|G|1312
4V4G|1|JB|U|1313
4V4G|1|JB|A|1314
4V4G|1|JB|A|1315
4V4G|1|JB|G|1316
*
4V4G|1|JB|C|1641
4V4G|1|JB|G|1642
4V4G|1|JB|A|1643
4V4G|1|JB|G|1644
*
4V4G|1|JB|C|1655
4V4G|1|JB|U|1656
4V4G|1|JB|A|1657
4V4G|1|JB|A|1658
4V4G|1|JB|G|1659

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains