J3_4V4H_004

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V4H|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4H_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0704

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V4H|1|AA|C|826
4V4H|1|AA|U|827
4V4H|1|AA|U|828
4V4H|1|AA|G|829
*
4V4H|1|AA|C|857
4V4H|1|AA|G|858
4V4H|1|AA|G|859
4V4H|1|AA|A|860
4V4H|1|AA|G|861
*
4V4H|1|AA|C|868
4V4H|1|AA|G|869
4V4H|1|AA|U|870
4V4H|1|AA|U|871
4V4H|1|AA|A|872
4V4H|1|AA|A|873
4V4H|1|AA|G|874

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AU

30S RIBOSOMAL PROTEIN S21