J3_4V4I_003

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V4I|1|w|G|686, 4V4I|1|w|G|792, 4V4I|1|w|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4I_003 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.3013

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4V4I|1|w|C|683
4V4I|1|w|G|684
4V4I|1|w|A|685
4V4I|1|w|G|686
4V4I|1|w|C|687
4V4I|1|w|U|688
4V4I|1|w|A|689
*
4V4I|1|w|U|773
4V4I|1|w|A|774
4V4I|1|w|G|775
*
4V4I|1|w|C|791
4V4I|1|w|G|792
4V4I|1|w|A|793
4V4I|1|w|G|794

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain Z

50S ribosomal protein L34