J3_4V4I_008

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4I_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.4894

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V4I|1|w|G|1344
4V4I|1|w|C|1345
4V4I|1|w|G|1346
4V4I|1|w|G|1347
4V4I|1|w|G|1348
4V4I|1|w|A|1349
4V4I|1|w|C|1350
*
4V4I|1|w|G|1381
4V4I|1|w|G|1382
4V4I|1|w|C|1383
4V4I|1|w|A|1384
4V4I|1|w|G|1385
*
4V4I|1|w|C|1402
4V4I|1|w|C|1403

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains