3D structure

PDB id
4V4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
Experimental method
X-RAY DIFFRACTION
Resolution
3.71 Å

Loop

Sequence
CUC*GAG*UAGAAG
Length
12 nucleotides
Bulged bases
4V4I|1|w|G|2334, 4V4I|1|w|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4I_032 not in the Motif Atlas
Homologous match to J3_7A0S_010
Geometric discrepancy: 0.404
The information below is about J3_7A0S_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_61124.2
Basepair signature
cWW-tWH-tWW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

4V4I|1|w|C|2295
4V4I|1|w|U|2296
4V4I|1|w|C|2297
*
4V4I|1|w|G|2321
4V4I|1|w|A|2322
4V4I|1|w|G|2323
*
4V4I|1|w|U|2332
4V4I|1|w|A|2333
4V4I|1|w|G|2334
4V4I|1|w|A|2335
4V4I|1|w|A|2336
4V4I|1|w|G|2337

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain M
50S ribosomal protein L18
Chain U
50S ribosomal protein L27
Chain x
5S ribosomal RNA; 5S rRNA
Chain z
Transfer RNA; tRNA

Coloring options:


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