J3_4V4I_034
3D structure
- PDB id
- 4V4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 4V4I|1|x|U|14, 4V4I|1|x|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4I_034 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.5854
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4I|1|x|C|11
4V4I|1|x|C|12
4V4I|1|x|A|13
4V4I|1|x|U|14
4V4I|1|x|A|15
4V4I|1|x|G|16
*
4V4I|1|x|C|68
4V4I|1|x|G|69
*
4V4I|1|x|U|107
4V4I|1|x|C|108
4V4I|1|x|G|109
Current chains
- Chain x
- 5S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
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