J3_4V4J_006

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4J_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.4278

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V4J|1|w|G|1055
4V4J|1|w|G|1056
4V4J|1|w|A|1057
*
4V4J|1|w|U|1081
4V4J|1|w|U|1082
4V4J|1|w|U|1083
4V4J|1|w|A|1084
4V4J|1|w|A|1085
4V4J|1|w|A|1086
4V4J|1|w|G|1087
*
4V4J|1|w|C|1102
4V4J|1|w|A|1103
4V4J|1|w|C|1104

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains