J3_4V4J_010

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4J_010 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.2149

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V4J|1|w|U|2091
4V4J|1|w|U|2092
4V4J|1|w|G|2093
*
4V4J|1|w|C|2196
4V4J|1|w|U|2197
4V4J|1|w|A|2198
4V4J|1|w|A|2199
4V4J|1|w|C|2205
*
4V4J|1|w|G|2219
4V4J|1|w|G|2224
4V4J|1|w|A|2225
4V4J|1|w|C|2226
4V4J|1|w|A|2227
4V4J|1|w|G|2228

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain G

50S ribosomal protein L9

Chain V

LSU ribosomal protein L28P