J3_4V4J_011
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V4J|1|w|G|2334, 4V4J|1|w|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_011 not in the Motif Atlas
- Homologous match to J3_7RQB_011
- Geometric discrepancy: 0.2744
- The information below is about J3_7RQB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.4
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V4J|1|w|C|2295
4V4J|1|w|U|2296
4V4J|1|w|C|2297
*
4V4J|1|w|G|2321
4V4J|1|w|A|2322
4V4J|1|w|G|2323
*
4V4J|1|w|U|2332
4V4J|1|w|A|2333
4V4J|1|w|G|2334
4V4J|1|w|A|2335
4V4J|1|w|A|2336
4V4J|1|w|G|2337
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain M
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L27
- Chain x
- 5S ribosomal RNA; 5S rRNA
- Chain z
- Transfer RNA; tRNA
Coloring options: