3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CAUC*GUU*AUUAAAG
Length
14 nucleotides
Bulged bases
4V4J|1|w|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4J_012 not in the Motif Atlas
Homologous match to J3_9DFE_017
Geometric discrepancy: 0.257
The information below is about J3_9DFE_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

4V4J|1|w|C|2517
4V4J|1|w|A|2518
4V4J|1|w|U|2519
4V4J|1|w|C|2520
*
4V4J|1|w|G|2545
4V4J|1|w|U|2546
4V4J|1|w|U|2547
*
4V4J|1|w|A|2561
4V4J|1|w|U|2562
4V4J|1|w|U|2563
4V4J|1|w|A|2564
4V4J|1|w|A|2565
4V4J|1|w|A|2566
4V4J|1|w|G|2567

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain I
50S ribosomal protein L14

Coloring options:


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