J3_4V4J_017
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V4J|1|y|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_017 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2681
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V4J|1|y|U|672
4V4J|1|y|G|673
*
4V4J|1|y|C|717
4V4J|1|y|G|718
4V4J|1|y|C|719
4V4J|1|y|C|720
4V4J|1|y|G|721
4V4J|1|y|A|722
4V4J|1|y|U|723
4V4J|1|y|G|724
4V4J|1|y|G|725
*
4V4J|1|y|C|732
4V4J|1|y|A|733
4V4J|1|y|G|734
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 3
- MRNA
- Chain g
- 30S ribosomal protein S6
- Chain l
- 30S ribosomal protein S11
- Chain p
- 30S ribosomal protein S15
- Chain s
- 30S ribosomal protein S18
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