J3_4V4J_024
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_024 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.2862
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4V4J|1|y|U|1073
4V4J|1|y|G|1074
*
4V4J|1|y|U|1083
4V4J|1|y|G|1084
4V4J|1|y|U|1085
4V4J|1|y|U|1086
*
4V4J|1|y|G|1099
4V4J|1|y|C|1100
4V4J|1|y|A|1101
4V4J|1|y|A|1102
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain f
- 30S ribosomal protein S5
Coloring options: