J3_4V4J_030
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_030 not in the Motif Atlas
- Homologous match to J3_9DFE_013
- Geometric discrepancy: 0.2139
- The information below is about J3_9DFE_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|w|G|1424
4V4J|1|w|G|1425
4V4J|1|w|G|1426
4V4J|1|w|A|1427
4V4J|1|w|C|1428
4V4J|1|w|G|1429
*
4V4J|1|w|C|1564
4V4J|1|w|C|1565
*
4V4J|1|w|G|1568
4V4J|1|w|A|1569
4V4J|1|w|A|1570
4V4J|1|w|A|1571
4V4J|1|w|A|1572
4V4J|1|w|G|1573
4V4J|1|w|C|1574
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
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