J3_4V4J_035
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4J_035 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.2477
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4J|1|y|C|936
4V4J|1|y|A|937
4V4J|1|y|A|938
4V4J|1|y|G|939
*
4V4J|1|y|C|1344
4V4J|1|y|U|1345
4V4J|1|y|A|1346
4V4J|1|y|G|1347
4V4J|1|y|U|1348
4V4J|1|y|A|1349
4V4J|1|y|A|1350
*
4V4J|1|y|U|1372
4V4J|1|y|G|1373
4V4J|1|y|A|1374
4V4J|1|y|A|1375
4V4J|1|y|U|1376
4V4J|1|y|A|1377
4V4J|1|y|C|1378
4V4J|1|y|G|1379
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
Coloring options: