J3_4V4P_007

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.5704

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V4P|1|AA|G|2090
4V4P|1|AA|U|2091
4V4P|1|AA|U|2092
4V4P|1|AA|G|2093
*
4V4P|1|AA|C|2196
4V4P|1|AA|U|2197
4V4P|1|AA|A|2198
4V4P|1|AA|A|2199
4V4P|1|AA|C|2205
*
4V4P|1|AA|G|2219
4V4P|1|AA|G|2224
4V4P|1|AA|A|2225
4V4P|1|AA|C|2226
4V4P|1|AA|A|2227
4V4P|1|AA|G|2228
4V4P|1|AA|C|2229

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain AD

50S ribosomal protein L2

Chain AK

50S ribosomal protein L9