J3_4V4P_023

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V4P|1|AA|U|499, 4V4P|1|AA|G|500, 4V4P|1|AA|U|504, 4V4P|1|AA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_023 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.3055

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V4P|1|AA|G|30
4V4P|1|AA|C|31
*
4V4P|1|AA|G|474
4V4P|1|AA|U|475
4V4P|1|AA|G|476
4V4P|1|AA|A|477
4V4P|1|AA|A|478
4V4P|1|AA|A|479
4V4P|1|AA|A|480
4V4P|1|AA|G|481
4V4P|1|AA|A|482
4V4P|1|AA|A|483
4V4P|1|AA|C|484
*
4V4P|1|AA|G|496
4V4P|1|AA|A|497
4V4P|1|AA|G|498
4V4P|1|AA|U|499
4V4P|1|AA|G|500
4V4P|1|AA|A|501
4V4P|1|AA|A|502
4V4P|1|AA|A|503
4V4P|1|AA|U|504
4V4P|1|AA|A|505
4V4P|1|AA|G|506
4V4P|1|AA|A|507
4V4P|1|AA|G|508
4V4P|1|AA|C|509
4V4P|1|AA|C|510

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L20

Chain AS

50S ribosomal protein L22

Chain AU

50S ribosomal protein L24