J3_4V4P_024
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V4P|1|AA|C|34, 4V4P|1|AA|U|448, 4V4P|1|AA|A|454, 4V4P|1|AA|C|455, 4V4P|1|AA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4P_024 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.3445
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4V4P|1|AA|C|32
4V4P|1|AA|U|33
4V4P|1|AA|C|34
4V4P|1|AA|G|35
*
4V4P|1|AA|C|445
4V4P|1|AA|G|446
4V4P|1|AA|A|447
4V4P|1|AA|U|448
4V4P|1|AA|A|449
4V4P|1|AA|G|450
4V4P|1|AA|C|451
4V4P|1|AA|G|452
4V4P|1|AA|C|453
4V4P|1|AA|A|454
4V4P|1|AA|C|455
4V4P|1|AA|C|456
4V4P|1|AA|A|457
4V4P|1|AA|G|458
4V4P|1|AA|U|459
4V4P|1|AA|A|460
4V4P|1|AA|C|461
*
4V4P|1|AA|G|468
4V4P|1|AA|G|469
4V4P|1|AA|A|470
4V4P|1|AA|A|471
4V4P|1|AA|A|472
4V4P|1|AA|G|473
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L20
- Chain A7
- 50S ribosomal protein L34
- Chain AF
- 50S ribosomal protein L4
- Chain AS
- 50S ribosomal protein L22
- Chain AU
- 50S ribosomal protein L24
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