J3_4V4P_036

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V4P|1|BA|U|1240, 4V4P|1|BA|C|1297, 4V4P|1|BA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4P_036 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2044

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V4P|1|BA|C|1237
4V4P|1|BA|A|1238
4V4P|1|BA|A|1239
4V4P|1|BA|U|1240
4V4P|1|BA|G|1241
*
4V4P|1|BA|C|1296
4V4P|1|BA|C|1297
4V4P|1|BA|C|1298
4V4P|1|BA|A|1299
4V4P|1|BA|G|1300
4V4P|1|BA|U|1301
4V4P|1|BA|U|1302
4V4P|1|BA|C|1303
*
4V4P|1|BA|G|1334
4V4P|1|BA|C|1335
4V4P|1|BA|C|1336
4V4P|1|BA|G|1337

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BJ

30S ribosomal protein S7

Chain BP

30S ribosomal protein S13

Chain BX

30S ribosomal protein Thx