J3_4V4Q_020

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Q_020 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0893

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4Q|1|BB|C|1298
4V4Q|1|BB|G|1299
4V4Q|1|BB|G|1300
4V4Q|1|BB|A|1301
4V4Q|1|BB|A|1302
4V4Q|1|BB|G|1303
*
4V4Q|1|BB|C|1625
4V4Q|1|BB|A|1626
4V4Q|1|BB|G|1627
*
4V4Q|1|BB|C|1639
4V4Q|1|BB|A|1640
4V4Q|1|BB|A|1641
4V4Q|1|BB|G|1642

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17