J3_4V4Q_039

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V4Q|1|CA|U|1240, 4V4Q|1|CA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Q_039 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2023

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V4Q|1|CA|C|1237
4V4Q|1|CA|A|1238
4V4Q|1|CA|A|1239
4V4Q|1|CA|U|1240
4V4Q|1|CA|G|1241
*
4V4Q|1|CA|C|1296
4V4Q|1|CA|G|1297
4V4Q|1|CA|U|1298
4V4Q|1|CA|A|1299
4V4Q|1|CA|G|1300
4V4Q|1|CA|U|1301
4V4Q|1|CA|C|1302
4V4Q|1|CA|C|1303
*
4V4Q|1|CA|G|1334
4V4Q|1|CA|U|1335
4V4Q|1|CA|C|1336
4V4Q|1|CA|G|1337

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13