J3_4V4S_047

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V4S|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4S_047 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1965

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V4S|1|BA|G|1344
4V4S|1|BA|C|1345
4V4S|1|BA|G|1346
4V4S|1|BA|G|1347
4V4S|1|BA|G|1348
4V4S|1|BA|A|1349
4V4S|1|BA|C|1350
*
4V4S|1|BA|G|1381
4V4S|1|BA|G|1382
4V4S|1|BA|C|1383
4V4S|1|BA|A|1384
4V4S|1|BA|G|1385
*
4V4S|1|BA|C|1402
4V4S|1|BA|C|1403

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23