3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4V_005 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.2159
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V4V|1|AA|C|1063
4V4V|1|AA|G|1064
4V4V|1|AA|U|1065
4V4V|1|AA|C|1066
4V4V|1|AA|A|1067
4V4V|1|AA|G|1068
*
4V4V|1|AA|C|1107
4V4V|1|AA|G|1108
4V4V|1|AA|C|1109
4V4V|1|AA|A|1110
4V4V|1|AA|A|1111
4V4V|1|AA|C|1112
4V4V|1|AA|C|1113
*
4V4V|1|AA|G|1187
4V4V|1|AA|A|1188
4V4V|1|AA|U|1189
4V4V|1|AA|G|1190
4V4V|1|AA|A|1191
4V4V|1|AA|C|1192
4V4V|1|AA|G|1193

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal subunit protein S2
Chain AC
30S ribosomal subunit protein S3
Chain AE
30S ribosomal subunit protein S5
Chain AI
30S ribosomal subunit protein S9
Chain AJ
30S ribosomal subunit protein S10

Coloring options:


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