J3_4V4V_007

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

4V4V|1|AA|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_007 not in the Motif Atlas

Geometric match to J3_4LFB_018

Geometric discrepancy: 0.2066

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V4V|1|AA|U|1116
4V4V|1|AA|A|1117
4V4V|1|AA|U|1118
*
4V4V|1|AA|A|1155
4V4V|1|AA|G|1156
4V4V|1|AA|A|1157
4V4V|1|AA|C|1158
4V4V|1|AA|U|1159
4V4V|1|AA|G|1160
4V4V|1|AA|C|1161
*
4V4V|1|AA|G|1175
4V4V|1|AA|A|1176
4V4V|1|AA|G|1177
4V4V|1|AA|G|1178
4V4V|1|AA|A|1179
4V4V|1|AA|A|1180
4V4V|1|AA|G|1181
4V4V|1|AA|G|1182
4V4V|1|AA|U|1183
4V4V|1|AA|G|1184

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal subunit protein S2

Chain AI

30S ribosomal subunit protein S9

Chain AJ

30S ribosomal subunit protein S10