J3_4V4V_008

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_008 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1788

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4V4V|1|B0|G|30
4V4V|1|B0|C|31
*
4V4V|1|B0|G|474
4V4V|1|B0|C|475
4V4V|1|B0|G|476
4V4V|1|B0|A|477
4V4V|1|B0|A|478
4V4V|1|B0|A|479
4V4V|1|B0|A|480
4V4V|1|B0|G|481
*
4V4V|1|B0|C|509
4V4V|1|B0|C|510

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L20

Chain BS

50S ribosomal protein L24