J3_4V4V_009

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCAG*CGAAC*GAUGAC

Length

15 nucleotides

Bulged bases

4V4V|1|B0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_009 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.3683

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V4V|1|B0|G|697
4V4V|1|B0|C|698
4V4V|1|B0|A|699
4V4V|1|B0|G|700
*
4V4V|1|B0|C|732
4V4V|1|B0|G|733
4V4V|1|B0|A|734
4V4V|1|B0|A|735
4V4V|1|B0|C|736
*
4V4V|1|B0|G|760
4V4V|1|B0|A|761
4V4V|1|B0|U|762
4V4V|1|B0|G|763
4V4V|1|B0|A|764
4V4V|1|B0|C|765

Current chains

Chain B0

23S ribosomal RNA

Nearby chains