J3_4V4V_016

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

4V4V|1|B0|U|2833, 4V4V|1|B0|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4V_016 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.5184

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V4V|1|B0|G|2812
4V4V|1|B0|A|2813
4V4V|1|B0|A|2814
4V4V|1|B0|C|2815
*
4V4V|1|B0|G|2831
4V4V|1|B0|U|2832
4V4V|1|B0|U|2833
4V4V|1|B0|G|2834
4V4V|1|B0|A|2835
4V4V|1|B0|U|2836
*
4V4V|1|B0|A|2882
4V4V|1|B0|A|2883
4V4V|1|B0|U|2884
4V4V|1|B0|G|2885
4V4V|1|B0|A|2886
4V4V|1|B0|A|2887
4V4V|1|B0|C|2888

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L22

Chain BZ

50S ribosomal protein L32