3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UG*UGUU*GCAA
Length
10 nucleotides
Bulged bases
4V4V|1|AA|A|1101
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4V_032 not in the Motif Atlas
Homologous match to J3_4LFB_017
Geometric discrepancy: 0.1413
The information below is about J3_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_79369.1
Basepair signature
cWW-cWW-tSS-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

4V4V|1|AA|U|1073
4V4V|1|AA|G|1074
*
4V4V|1|AA|U|1083
4V4V|1|AA|G|1084
4V4V|1|AA|U|1085
4V4V|1|AA|U|1086
*
4V4V|1|AA|G|1099
4V4V|1|AA|C|1100
4V4V|1|AA|A|1101
4V4V|1|AA|A|1102

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal subunit protein S2
Chain AE
30S ribosomal subunit protein S5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2134 s