J3_4V4W_004
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCUAC
- Length
- 29 nucleotides
- Bulged bases
- 4V4W|1|AA|U|960, 4V4W|1|AA|A|975, 4V4W|1|AA|G|976, 4V4W|1|AA|A|978, 4V4W|1|AA|U|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4W_004 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.4184
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V4W|1|AA|G|954
4V4W|1|AA|U|955
4V4W|1|AA|U|956
4V4W|1|AA|U|957
4V4W|1|AA|A|958
4V4W|1|AA|A|959
4V4W|1|AA|U|960
4V4W|1|AA|U|961
4V4W|1|AA|C|962
*
4V4W|1|AA|G|973
4V4W|1|AA|A|974
4V4W|1|AA|A|975
4V4W|1|AA|G|976
4V4W|1|AA|A|977
4V4W|1|AA|A|978
4V4W|1|AA|C|979
4V4W|1|AA|C|980
4V4W|1|AA|U|981
4V4W|1|AA|U|982
4V4W|1|AA|A|983
4V4W|1|AA|C|984
4V4W|1|AA|C|985
*
4V4W|1|AA|G|1220
4V4W|1|AA|G|1221
4V4W|1|AA|G|1222
4V4W|1|AA|C|1223
4V4W|1|AA|U|1224
4V4W|1|AA|A|1225
4V4W|1|AA|C|1226
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AJ
- 30S ribosomal subunit protein S10
- Chain AM
- 30S ribosomal subunit protein S13
- Chain AN
- 30S ribosomal subunit protein S14
- Chain AS
- 30S ribosomal subunit protein S19
- Chain AU
- Transfer RNA; tRNA
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