J3_4V4W_005
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CGUCAGC*GCGCAACC*GAUGACG
- Length
- 22 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4W_005 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.5787
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V4W|1|AA|C|1063
4V4W|1|AA|G|1064
4V4W|1|AA|U|1065
4V4W|1|AA|C|1066
4V4W|1|AA|A|1067
4V4W|1|AA|G|1068
4V4W|1|AA|C|1069
*
4V4W|1|AA|G|1106
4V4W|1|AA|C|1107
4V4W|1|AA|G|1108
4V4W|1|AA|C|1109
4V4W|1|AA|A|1110
4V4W|1|AA|A|1111
4V4W|1|AA|C|1112
4V4W|1|AA|C|1113
*
4V4W|1|AA|G|1187
4V4W|1|AA|A|1188
4V4W|1|AA|U|1189
4V4W|1|AA|G|1190
4V4W|1|AA|A|1191
4V4W|1|AA|C|1192
4V4W|1|AA|G|1193
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal subunit protein S3
- Chain AE
- 30S ribosomal subunit protein S5
- Chain AI
- 30S ribosomal subunit protein S9
- Chain AJ
- 30S ribosomal subunit protein S10
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