J3_4V4W_032
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 4V4W|1|AA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4W_032 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.2269
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4W|1|AA|U|1116
4V4W|1|AA|A|1117
4V4W|1|AA|U|1118
*
4V4W|1|AA|A|1155
4V4W|1|AA|G|1156
4V4W|1|AA|A|1157
4V4W|1|AA|C|1158
4V4W|1|AA|U|1159
4V4W|1|AA|G|1160
4V4W|1|AA|C|1161
*
4V4W|1|AA|G|1175
4V4W|1|AA|A|1176
4V4W|1|AA|G|1177
4V4W|1|AA|G|1178
4V4W|1|AA|A|1179
4V4W|1|AA|A|1180
4V4W|1|AA|G|1181
4V4W|1|AA|G|1182
4V4W|1|AA|U|1183
4V4W|1|AA|G|1184
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal subunit protein S2
- Chain AI
- 30S ribosomal subunit protein S9
Coloring options: