J3_4V4X_004

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V4X|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4X_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1603

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

4V4X|1|AA|C|826
4V4X|1|AA|U|827
4V4X|1|AA|A|828
4V4X|1|AA|G|829
*
4V4X|1|AA|C|857
4V4X|1|AA|G|858
4V4X|1|AA|A|859
4V4X|1|AA|A|860
4V4X|1|AA|G|861
*
4V4X|1|AA|C|868
4V4X|1|AA|G|869
4V4X|1|AA|U|870
4V4X|1|AA|U|871
4V4X|1|AA|A|872
4V4X|1|AA|A|873
4V4X|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S2

Chain AK

30S ribosomal protein S8