J3_4V4X_008

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V4X|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4X_008 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2577

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V4X|1|AA|C|990
4V4X|1|AA|U|991
4V4X|1|AA|U|992
4V4X|1|AA|G|993
4V4X|1|AA|A|994
4V4X|1|AA|C|995
4V4X|1|AA|A|996
4V4X|1|AA|U|997
*
4V4X|1|AA|A|1044
4V4X|1|AA|C|1045
4V4X|1|AA|A|1046
4V4X|1|AA|G|1047
*
4V4X|1|AA|C|1210
4V4X|1|AA|U|1211
4V4X|1|AA|U|1212
4V4X|1|AA|A|1213
4V4X|1|AA|C|1214
4V4X|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AQ

30S ribosomal protein S14