J3_4V4X_013

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4V4X|1|AA|U|1240, 4V4X|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4X_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.2715

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V4X|1|AA|C|1237
4V4X|1|AA|A|1238
4V4X|1|AA|A|1239
4V4X|1|AA|U|1240
4V4X|1|AA|G|1241
*
4V4X|1|AA|C|1296
4V4X|1|AA|C|1297
4V4X|1|AA|C|1298
4V4X|1|AA|A|1299
4V4X|1|AA|G|1300
4V4X|1|AA|U|1301
4V4X|1|AA|U|1302
4V4X|1|AA|C|1303
*
4V4X|1|AA|G|1334
4V4X|1|AA|C|1335
4V4X|1|AA|C|1336
4V4X|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S7

Chain AP

30S ribosomal protein S13

Chain AX

30S ribosomal protein Thx