J3_4V50_020

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_020 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0766

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V50|1|BB|C|1298
4V50|1|BB|G|1299
4V50|1|BB|G|1300
4V50|1|BB|A|1301
4V50|1|BB|A|1302
4V50|1|BB|G|1303
*
4V50|1|BB|C|1625
4V50|1|BB|A|1626
4V50|1|BB|G|1627
*
4V50|1|BB|C|1639
4V50|1|BB|A|1640
4V50|1|BB|A|1641
4V50|1|BB|G|1642

Current chains

Chain BB

23S ribosomal RNA

Nearby chains