J3_4V50_062

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

4V50|1|CA|C|48, 4V50|1|CA|A|50, 4V50|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V50_062 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1071

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V50|1|CA|G|46
4V50|1|CA|C|47
4V50|1|CA|C|48
4V50|1|CA|U|49
4V50|1|CA|A|50
4V50|1|CA|A|51
4V50|1|CA|C|52
*
4V50|1|CA|G|359
4V50|1|CA|G|360
4V50|1|CA|G|361
4V50|1|CA|G|362
4V50|1|CA|A|363
4V50|1|CA|A|364
4V50|1|CA|U|365
4V50|1|CA|A|366
4V50|1|CA|U|367
*
4V50|1|CA|A|393
4V50|1|CA|G|394
4V50|1|CA|C|395

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16