3D structure

PDB id
4V51 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4V51|1|BA|C|34, 4V51|1|BA|U|448, 4V51|1|BA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V51_056 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.1289
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4V51|1|BA|C|32
4V51|1|BA|U|33
4V51|1|BA|C|34
4V51|1|BA|G|35
*
4V51|1|BA|C|445
4V51|1|BA|G|446
4V51|1|BA|A|447
4V51|1|BA|U|448
4V51|1|BA|A|449
4V51|1|BA|G|450
4V51|1|BA|C|451
4V51|1|BA|G|452
4V51|1|BA|C|453
4V51|1|BA|A|454
4V51|1|BA|C|455
4V51|1|BA|C|456
4V51|1|BA|A|457
4V51|1|BA|G|458
4V51|1|BA|U|459
4V51|1|BA|A|460
4V51|1|BA|C|461
*
4V51|1|BA|G|468
4V51|1|BA|G|469
4V51|1|BA|A|470
4V51|1|BA|A|471
4V51|1|BA|A|472
4V51|1|BA|G|473

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B7
50S RIBOSOMAL PROTEIN L34
Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BU
50S RIBOSOMAL PROTEIN L20
Chain BX
50S RIBOSOMAL PROTEIN L23

Coloring options:


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