J3_4V53_019

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_019 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2222

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V53|1|BB|G|1055
4V53|1|BB|G|1056
4V53|1|BB|A|1057
*
4V53|1|BB|U|1081
4V53|1|BB|U|1082
4V53|1|BB|U|1083
4V53|1|BB|A|1084
4V53|1|BB|A|1085
4V53|1|BB|A|1086
4V53|1|BB|G|1087
*
4V53|1|BB|C|1102
4V53|1|BB|A|1103
4V53|1|BB|C|1104

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BI

50S ribosomal protein L11