J3_4V53_030

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V53|1|CA|U|871, 4V53|1|CA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_030 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0716

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V53|1|CA|C|826
4V53|1|CA|U|827
4V53|1|CA|U|828
4V53|1|CA|G|829
*
4V53|1|CA|C|857
4V53|1|CA|G|858
4V53|1|CA|G|859
4V53|1|CA|A|860
4V53|1|CA|G|861
*
4V53|1|CA|C|868
4V53|1|CA|G|869
4V53|1|CA|U|870
4V53|1|CA|U|871
4V53|1|CA|A|872
4V53|1|CA|A|873
4V53|1|CA|G|874

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CH

30S ribosomal protein S8

Chain CU

30S ribosomal protein S21