J3_4V53_071

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V53_071 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0787

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V53|1|DB|G|1424
4V53|1|DB|G|1425
4V53|1|DB|G|1426
4V53|1|DB|A|1427
4V53|1|DB|C|1428
4V53|1|DB|G|1429
*
4V53|1|DB|C|1564
4V53|1|DB|C|1565
*
4V53|1|DB|G|1568
4V53|1|DB|A|1569
4V53|1|DB|A|1570
4V53|1|DB|A|1571
4V53|1|DB|A|1572
4V53|1|DB|G|1573
4V53|1|DB|C|1574

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2