J3_4V54_021

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V54|1|BB|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V54_021 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1641

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V54|1|BB|C|1306
4V54|1|BB|A|1307
4V54|1|BB|A|1308
4V54|1|BB|G|1309
*
4V54|1|BB|C|1605
4V54|1|BB|C|1606
4V54|1|BB|C|1607
4V54|1|BB|A|1608
4V54|1|BB|A|1609
4V54|1|BB|A|1610
4V54|1|BB|C|1611
*
4V54|1|BB|G|1620
4V54|1|BB|U|1621
4V54|1|BB|G|1622

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34